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Classification wrapper

16S rRNA taxonomic classification wrapper

classification_wrapper.pl
Main program.
control.file
Essential for running the main program (please see README file).
README
All details of the usage of the 16S rRNA taxonomic classification wrapper are described here on the basis of the test data.
Test data
Part of 16S rRNA 454-pyrosequencing test data from the study of Bulgarelli et. al. "Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota", Nature 2012, 488(7409).
description.txt
Essential for running the main program (please see README file).
Link to the actual rdp_classifier program
Essential for running the main program (please see README file). Wang et al. 2007. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl Environ Microbiol. 73(16):5261-7
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